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Table 3 Probes from interaction biosignature contributing to the PCA model

From: Discovery and replication of a peripheral tissue DNA methylation biosignature to augment a suicide prediction model

Probe ID

Location (hg19)

Gene symbol

Gene name

cg01060471

chr10:103911733

NOLC1

Nucleolar and coiled body phosphoprotein 1

cg01252219

chr12:110302105

GLTP

Glycolipid transfer protein

cg02068690

chr2:25600451

DTNB

Dystrobrevin, beta

cg02097235

chr16:1116799

SSTR5-AS1

SSTR5 antisense RNA 1

cg02246725

chr11:2014127

HOTS

H19 opposite tumor suppressor

cg02340818

chr8:145808436

ARHGAP39

Rho GTPase activating protein 39

cg02464608

chr3:122631723

SEMA5B

Semaphorin 5B

cg02516957

chr8:128011063

  

cg02953125

chr2:1079100

SNTG2

Syntrophin, gamma 2

cg03198117

chrX:152939967

PNCK

Pregnancy up-regulated nonubiquitous CaM kinase

cg03351894

chrX:48686200

ERAS

ES cell expressed Ras

cg03782771

chr4:152801238

  

cg03887528

chr2:231090531

SP140

SP140 nuclear body protein

cg06363485

chr6:41207376

TREML4

Triggering receptor expressed on myeloid cells like 4

cg06774087

chr5:79647614

CRSP8P

Mediator complex subunit 27 pseudogene

cg07483709

chr10:29439573

  

cg07589300

chr4:1404128

  

cg07787977

chr1:962651

AGRN

Agrin

cg08119631

chrX:118822815

SEPT6

Septin 6

cg08469255

chr6:30851069

DDR1

Discoidin domain receptor tyrosine kinase 1

cg08674415

chr16:34430905

  

cg08720806

chr11:125142671

PKNOX2

PBX/knotted 1 homeobox 2

cg08795752

chr9:136293271

ADAMTS13

ADAM metallopeptidase with thrombospondin type 1 motif, 13

cg09105334

chr17:15683060

  

cg11450546

chr19:43965012

LYPD3

LY6/PLAUR domain containing 3

cg11496113

chr5:34627766

  

cg11780096

chr2:178976254

RBM45

RNA binding motif protein 45

cg11880367

chr10:80141181

LINC00856

 

cg12378817

chr10:133961235

JAKMIP3

Janus kinase and microtubule interacting protein 3

cg12622680

chr7:158819620

LINC00689

 

cg12833118

chr4:2572546

  

cg12967319

chr14:101291997

MEG3

Maternally expressed 3 (non-protein coding)

cg13466253

chr20:3731334

HSPA12B

Heat shock 70kD protein 12B

cg13798679

chr1:36617570

TRAPPC3

Trafficking protein particle complex 3

cg14439102

chr9:80360719

GNAQ

Guanine nucleotide binding protein (G protein), q polypeptide

cg14509196

chr15:25494565

SNORD115-44

Small nucleolar RNA, C/D box 115-44

cg15071166

chr17:3771325

CAMKK1

Calcium/calmodulin-dependent protein kinase kinase 1, alpha

cg15302379

chr10:102821848

KAZALD1

Kazal-type serine peptidase inhibitor domain 1

cg15508401

chr2:239997380

HDAC4

Histone deacetylase 4

cg15677087

chr20:61584850

SLC17A9

Solute carrier family 17, member 9

cg15838142

chr17:77184010

RBFOX3

RNA binding protein, fox-1 homolog 3

cg16900102

chr7:98283412

  

cg16943635

chr11:62067691

SCGB1D4

Secretoglobin, family 1D, member 4

cg17267737

chr7:158819531

LINC00689

 

cg17813840

chr15:79852956

  

cg18144654

chr3:127995346

EEFSEC

Eukaryotic elongation factor, selenocysteine-tRNA-specific

cg18546110

chr4:10763497

  

cg19688321

chrX:70476177

BCYRN1

Brain cytoplasmic RNA 1

cg20704602

chr6:29635371

MOG

Myelin oligodendrocyte glycoprotein

cg20929545

chr11:118958046

HMBS

Hydroxymethylbilane synthase

cg21066636

chr17:4675292

TM4SF5

Transmembrane 4 L six family member 5

cg21352158

chr8:832917

ERICH1-AS1

ERICH1 antisense RNA 1

cg21407196

chr1:46751975

LRRC41

Leucine rich repeat containing 41

cg21729235

chrX:100739272

ARMCX4

Armadillo repeat containing, X-linked 4

cg22029879

chr8:1790861

ARHGEF10

Rho guanine nucleotide exchange factor 10

cg22133973

chr6:170789640

PSMB1

Proteasome subunit beta 1

cg22184136

chr6:30038720

RNF39

Ring finger protein 39

cg22939113

chr19:40719949

MAP3K10

Mitogen-activated protein kinase kinase kinase 10

cg22954621

chr10:13514626

BEND7

BEN domain containing 7

cg23043139

chr3:13678918

FBLN2

Fibulin 2

cg23374863

chr14:94984140

SERPINA12

Serpin family A member 12

cg24112628

chr6:150174215

LRP11

Low-density lipoprotein receptor-related protein 11

cg24416190

chr4:186007379

  

cg24437859

chr12:7066614

PTPN6

Protein tyrosine phosphatase, non-receptor type 6

cg25132241

chr14:92396859

FBLN5

Fibulin 5

cg25133951

chr1:178575267

  

cg25215117

chr17:11461665

SHISA6

Shisa family member 6

cg25447359

chr22:30790057

  

cg25477843

chr8:145061318

PARP10

Poly (ADP-ribose) polymerase family, member 10

cg26224354

chr7:1096374

GPR146

G protein-coupled receptor 146

cg26305504

chr19:947612

ARID3A

AT-rich interactive domain 3A

cg26493346

chr16:1812273

MAPK8IP3

Mitogen-activated protein kinase 8 interacting protein 3