From: DNA methylation and smoking in Korean adults: epigenome-wide association study
Chra | Gene | Distance to geneb | DMRcate | Comb-p | Minimum P i | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Start (bpc) | End (bp) | FDRd | #CpGse | Start (bp) | End (bp) | Sidak Pf | #CpGs | ||||
1 | MXRA8 | −812 | 1286917 | 1287259 | 0.002 | 2(2) | 0.002 | 2.2E−04 | |||
CASZ1 | −600 | 10695686 | 10696066 | 8.7E−04 | 2(2) | 0.009 | 1.5E−05 | ||||
AHDC1 | 27929092 | 27929260 | 2.2E−04 | 2(2) | 0.006 | 1.5E−04 | |||||
NT5C1A | 40137636g | 40138402 | 3.2E−06 | 6(3) | 0.001 | 5.5E−06 | |||||
ACOT11 h | −58,441 | 54954187 | 54955366 | 0.002 | 7(4) | 54953632 | 0.009 | 8(4) | 6.1E−04 | ||
GNG12 h | 68298816g | 68299511 | 7.0E−07 | 7(5) | 68299057 | 0.001 | 6(5) | 1.4E−06 | |||
GFI1 h | 92946700 | 92947961 | 1.1E−04 | 6(4) | 1.2E−04 | 8.1E−05 | |||||
SPAG17 | 118727658g | 118728226 | 1.3E−04 | 10(2) | 0.005 | 7.1E−06 | |||||
ZNF697 | 120173989 | 120174570 | 0.006 | 4(4) | 120174873 | 0.006 | 6(4) | 0.002 | |||
GALNT2 | 230415343 | 230416101 | 0.002 | 6(3) | 230414987 | 230417096 | 1.2E−04 | 12(4) | 0.005 | ||
SCCPDH | −26,962 | 246859889 | 246860416 | 7.0E−04 | 5(4) | 2.6E−04 | 0.002 | ||||
2 | PAX8 | 113992762 | 113993313 | 0.005 | 8(6) | 0.004 | 0.011 | ||||
ALPPL2 h | 11,458 | 233283010g | 233285607 | 8.0E−15 | 8(5) | 1.5E−13 | 8.4E−09 | ||||
SNED1 h | 241975756 | 241976244 | 1.9E−06 | 4(4) | 3.8E−06 | 1.4E−04 | |||||
3 | KRBOX1 | 11 | 42977777 | 42978180 | 9.7E−04 | 7(5) | 0.003 | 4.1E−04 | |||
GPR15 h | 98250723g | 98251294 | 6.2E−07 | 2(1) | 98249859 | 6.2E−04 | 4(2) | 1.0E−07 | |||
ZBTB38 | 141086820 | 141087363 | 0.006 | 6(4) | 0.005 | 0.005 | |||||
LPP h | 187870621 | 187871538 | 1.5E−05 | 11(5) | 0.001 | 1.1E−04 | |||||
C3orf43 | 21,882 | 196255632 | 196256223 | 9.7E−04 | 5(3) | 0.004 | 1.8E−04 | ||||
4 | PCGF3 | 737005 | 738199 | 0.002 | 8(2) | 736328 | 0.001 | 12(4) | 2.5E−05 | ||
FGFRL1 | −1776 | 1003208 | 1003834 | 1.5E−04 | 3(2) | 0.002 | 2.0E−04 | ||||
PRDM8 | 81117647g | 81119473 | 6.7E−13 | 11(10) | 2.9E−13 | 6.7E−06 | |||||
NHEDC1 | 103940711 | 103941300 | 6.8E−14 | 11(10) | 2.7E−10 | 6.2E−05 | |||||
CFI | 110724358 | 110724834 | 0.006 | 2(2) | 0.009 | 4.4E−04 | |||||
5 | AHRR h | 373378g | 374425 | 4.6E−17 | 5(2) | 373887 | 4.8E−05 | 2(1) | 6.5E−13 | ||
392920g | 393366 | 5.8E−08 | 3(3) | 3.9E−08 | 4.7E−06 | ||||||
LPCAT1 | 1494980 | 1495356 | 0.001 | 5(4) | 0.003 | 0.001 | |||||
LINC01019 | −236,319 | 3180918 | 3180947 | 0.006 | 2(2) | 3182108 | 6.0E−04 | 5(4) | 5.7E−04 | ||
FLJ44606 | 126408756 | 126409553 | 7.0E−07 | 13(11) | 1.9E−06 | 0.001 | |||||
ADAMTS2 | 178548229 | 178548700 | 0.002 | 3(3) | 0.003 | 8.5E−04 | |||||
6 | IER3 h | 9104 | 30720080 | 30720491 | 1.2E−06 | 8(4) | 0.002 | 1.7E−05 | |||
LY6G6E | 31683051 | 31683352 | 5.4E−05 | 6(5) | 1.2E−04 | 0.002 | |||||
HLA-DPB1 | 33047944 | 33049505 | 2.5E−09 | 20(15) | 4.8E−08 | 0.002 | |||||
SYNGAP1 h | 33400477 | 33401542 | 6.9E−06 | 9(7) | 33400021 | 2.2E−05 | 10(7) | 2.7E−04 | |||
CRISP2 | 49681178 | 49681774 | 5.5E−06 | 9(8) | 5.5E−06 | 1.8E−04 | |||||
UTRN | −4373 | 144607399 | 144608500 | 0.004 | 7(4) | 144607074 | 0.010 | 8(4) | 2.6E−04 | ||
ZC3H12D h | 149805995 | 149806732 | 2.3E−15 | 10(10) | 1.9E−14 | 8.7E−05 | |||||
TIAM2 h | 155537595 | 155538155 | 1.6E−05 | 8(5) | 3.7E−05 | 7.6E−04 | |||||
THBS2 | 169653612 | 169654719 | 9.5E−04 | 11(4) | 169654842 | 7.0E−04 | 12(4) | 5.3E−04 | |||
7 | GNA12 h | 2768988 | 2770410 | 4.7E−06 | 5(5) | 2769253 | 7.4E−05 | 4(4) | 3.0E−05 | ||
TRG-AS1 h | −29,710 | 38350464 | 38351468 | 2.0E−06 | 7(6) | 1.1E−05 | 1.7E−04 | ||||
MYO1G h | 45001765g | 45002919 | 5.5E−14 | 6(5) | 5.7E−09 | 2.7E−06 | |||||
INSIG1 | 61,195 | 155150681 | 155151427 | 0.007 | 4(3) | 0.002 | 0.003 | ||||
8 | DEFA4 | 6795162 | 6796618 | 2.0E−04 | 4(4) | 6794872 | 1.7E−05 | 5(4) | 4.0E−05 | ||
EPB49 h | 21915184 | 21915510 | 0.004 | 2(2) | 21914287 | 21916853 | 5.3E−05 | 11(6) | 0.002 | ||
TRAPPC9 | 141057285 | 141057827 | 3.7E−06 | 5(5) | 2.1E−06 | 2.0E−04 | |||||
GLI4 | 144358043 | 144359316 | 0.001 | 5(5) | 1.5E−05 | 0.002 | |||||
9 | CD72 | 35609853 | 35610380 | 0.002 | 2(2) | 0.007 | 1.1E−04 | ||||
CIZ1 | 130955135 | 130956057 | 0.001 | 4(3) | 130955436 | 0.004 | 3(3) | 0.001 | |||
10 | SNCG | 88717926 | 88718393 | 5.5E−04 | 5(5) | 3.8E−04 | 0.003 | ||||
SLC16A12 h | 91296252 | 91296457 | 1.6E−04 | 3(3) | 0.004 | 4.4E−04 | |||||
LGI1 | 95517382 | 95517895 | 6.3E−04 | 7(4) | 0.002 | 5.6E−04 | |||||
NKX2-3 | −4844 | 101287381g | 101287846 | 8.2E−06 | 5(3) | 1.3E−04 | 7.4E−06 | ||||
GRK5 | 121171859 | 121172898 | 6.4E−04 | 5(4) | 2.4E−04 | 4.1E−04 | |||||
11 | C11orf21 h | 2321770 | 2322674 | 1.2E−05 | 18(7) | 2323938 | 1.3E−04 | 33(8) | 5.9E−04 | ||
C11orf41 | 33562503 | 33563377 | 7.0E−04 | 4(4) | 33563946 | 2.3E−04 | 5(4) | 5.4E−04 | |||
NEAT1 h | 4664 | 65194933 | 65196227 | 2.2E−05 | 7(7) | 65196696 | 3.0E−05 | 10(7) | 4.9E−04 | ||
ACY3 | 67418045 | 67418405 | 1.1E−09 | 12(11) | 8.7E−08 | 1.3E−04 | |||||
CCND1 | 69462660g | 69463323 | 2.4E−06 | 6(3) | 1.7E−04 | 7.5E−07 | |||||
AMICA1 h | 118084920 | 118085736 | 0.005 | 4(4) | 0.002 | 0.003 | |||||
12 | IFFO1 | 6657744 | 6658945 | 2.7E−04 | 10(5) | 6659524 | 2.2E−04 | 12(5) | 8.1E−05 | ||
MGP | 15038440 | 15039432 | 9.5E−04 | 4(3) | 3.5E−05 | 9.3E−05 | |||||
KRT7 | 52638005 | 52638592 | 0.002 | 3(2) | 0.005 | 1.5E−04 | |||||
ZNF385A | 54778312 | 54779175 | 0.002 | 4(3) | 0.008 | 0.001 | |||||
RP11-474D1.3 | 36,620 | 130554977 | 130555091 | 1.8E−04 | 3(3) | 9.4E−04 | 1.7E−04 | ||||
STX2 | −73,033 | 131199848 | 131201112 | 7.2E−04 | 10(4) | 131198873 | 131201268 | 0.008 | 12(5) | 6.5E−05 | |
14 | LGMN | 93170710 | 93170970 | 0.002 | 3(3) | 0.008 | 6.6E−05 | ||||
EVL | 100610071 | 100610667 | 9.8E−05 | 6(4) | 1.9E−04 | 4.0E−04 | |||||
RIN3 | 92981121 | 92981666 | 1.6E−05 | 3(3) | 2.1E−05 | 1.8E−04 | |||||
15 | CALML4 | 68498251g | 68499367 | 2.6E−06 | 5(2) | 68497992 | 0.002 | 6(2) | 2.9E−07 | ||
16 | PRR25 | 854168 | 854640 | 0.002 | 4(3) | 855449 | 0.002 | 6(4) | 7.7E−04 | ||
BCL7C | 30906810 | 30907246 | 0.001 | 2(2) | 30907560 | 8.0E−04 | 3(3) | 9.0E−04 | |||
17 | ALOX15B | 7942137 | 7942743 | 1.1E−04 | 6(5) | 2.4E−04 | 3.9E−04 | ||||
NTN1 | 9018806 | 9019336 | 2.0E−05 | 5(4) | 5.5E−04 | 5.3E−04 | |||||
SLFN12L | −13,916 | 33787402 | 33788026 | 0.003 | 4(4) | 0.001 | 8.8E−04 | ||||
CYB561 | 61511069 | 61511829 | 4.9E−04 | 4(4) | 9.3E−05 | 5.2E−04 | |||||
CCDC57 | 80076338 | 80076378 | 1.1E−04 | 2(2) | 0.002 | 2.2E−05 | |||||
FOXK2 | 80545020g | 80545869 | 8.1E−08 | 11(6) | 2.6E−04 | 5.5E−06 | |||||
TBCD | 80870107 | 80870923 | 0.001 | 5(3) | 80871405 | 0.002 | 7(4) | 1.8E−04 | |||
18 | C18orf1 | 13611370 | 13611824 | 0.007 | 6(4) | 0.009 | 0.003 | ||||
19 | GNG7 | 2543602 | 2544100 | 0.008 | 5(2) | 2542837 | 0.002 | 6(3) | 6.4E−04 | ||
MAN2B1 | 12758416 | 12759546 | 0.004 | 7(4) | 0.001 | 0.002 | |||||
LAIR1 | 54876446 | 54876795 | 1.8E−04 | 5(4) | 8.1E−04 | 2.3E−04 | |||||
20 | C20orf27 | 3745817 | 3746315 | 0.002 | 2(2) | 0.004 | 8.8E−05 | ||||
22 | SYNGR1 | 39759864g | 39760267 | 1.2E−07 | 5(5) | 1.2E−06 | 2.5E−06 | ||||
SHISA8 | −978 | 42304331 | 42304580 | 1.4E−04 | 2(2) | 6.9E−04 | 2.3E−05 | ||||
ODF3B | 50970943 | 50971140 | 4.2E−04 | 3(3) | 0.002 | 1.6E−04 |