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Table 3 Localisation of the CpG sites in the genome

From: Insulin-like growth factor axis in pregnancies affected by fetal growth disorders

Gene

CpG number

CpG location

Transcription start site (TSS)

Forward primer

Reverse primer (biotinylated)

IGF1

1

Chr12: −102874567

102874323

GATAGGAAATAGTTGGGGGAATATTTGT

AATCTACTTTACCCCAATCACTTCAA

IGF1

2

Chr12: −102874689

102874323

GATAGGAAATAGTTGGGGGAATATTTGT

AATCTACTTTACCCCAATCACTTCAA

IGF1

3

Chr12: −102874755

102874323

GATAGGAAATAGTTGGGGGAATATTTGT

AATCTACTTTACCCCAATCACTTCAA

IGFBP1

1

Chr7: 45927583

45928093

TTGAGTAGGGTTTTGGGTGTATTAGTAA

AACCCAAACTCTAAACAAATAATAAT

IGFBP1

2

Chr7: 45927579

45928093

TTGAGTAGGGTTTTGGGTGTATTAGTAA

AACCCAAACTCTAAACAAATAATAAT

IGFBP1

3

Chr7: 45927575

45928093

TTGAGTAGGGTTTTGGGTGTATTAGTAA

AACCCAAACTCTAAACAAATAATAAT

IGFBP2

9

Chr2:217497928

217498172

TGGGGGTTTAGGGTGTTAAG

CTAACCCCTAAAAAACACAAAAAACAT

IGFBP2

10

Chr2:217497846

217498172

TGGGGGTTTAGGGTGTTAAG

CTAACCCCTAAAAAACACAAAAAACAT

IGFBP2

11

Chr2:217497740

217498172

TGGGGGTTTAGGGTGTTAAG

CTAACCCCTAAAAAACACAAAAAACAT

IGFBP3

46

Chr7: −45960433

45960866

AGAAGTAGGGGTGGTTTAGGATA

AAACCCTATATACCAATTTCCC

IGFBP3

47

Chr7: −45960418

45960866

AGAAGTAGGGGTGGTTTAGGATA

AAACCCTATATACCAATTTCCC

IGFBP3

48

Chr7: −45960415

45960866

AGAAGTAGGGGTGGTTTAGGATA

AAACCCTATATACCAATTTCCC

IGFBP3

49

Chr7:-45960400

45960866

AGAAGTAGGGGTGGTTTAGGATA

AAACCCTATATACCAATTTCCC

IGFBP3

50

Chr7: −45960394

45960866

AGAAGTAGGGGTGGTTTAGGATA

AAACCCTATATACCAATTTCCC

IGFBP4

23

Chr17: 38599317

38599681

GGGGTTTAGGTTTAGAGGTATTTTGG

ACCCCCAACCCCTTCCCAAAAAT

IGFBP4

24

Chr17: 38599314

38599681

GGGGTTTAGGTTTAGAGGTATTTTGG

ACCCCCAACCCCTTCCCAAAAAT

IGFBP4

25

Chr17: 38599311

38599681

GGGGTTTAGGTTTAGAGGTATTTTGG

ACCCCCAACCCCTTCCCAAAAAT

IGFBP4

26

Chr17: 38599308

38599681

GGGGTTTAGGTTTAGAGGTATTTTGG

ACCCCCAACCCCTTCCCAAAAAT

IGFBP4

27

Chr17: 38599305

38599681

GGGGTTTAGGTTTAGAGGTATTTTGG

ACCCCCAACCCCTTCCCAAAAAT

IGFBP4

28

Chr17: 38599302

38599681

GGGGTTTAGGTTTAGAGGTATTTTGG

ACCCCCAACCCCTTCCCAAAAAT

IGFBP4

29

Chr17: 38599299

38599681

GGGGTTTAGGTTTAGAGGTATTTTGG

ACCCCCAACCCCTTCCCAAAAAT

IGFBP7

8

Chr4: −57976141

57975928

GGAAAGGGGAGAAATTAGAGGG

TCCTACTCCATCCCCAAT

IGFBP7

9

Chr4: −57976145

57975928

GGAAAGGGGAGAAATTAGAGGG

TCCTACTCCATCCCCAAT

IGFBP7

10

Chr4: −57976152

57975928

GGAAAGGGGAGAAATTAGAGGG

TCCTACTCCATCCCCAAT

IGFBP7

11

Chr4: −57976157

57975928

GGAAAGGGGAGAAATTAGAGGG

TCCTACTCCATCCCCAAT

IGFBP7

12

Chr4: −57976172

57975928

GGAAAGGGGAGAAATTAGAGGG

TCCTACTCCATCCCCAAT

  1. Target CpGs were identified within 500 bp from the transcription start sites of the respective genes