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Table 1 FEMs associated with ER+ breast cancer as inferred in the TCGA data set

From: The integrative epigenomic-transcriptomic landscape of ER positive breast cancer

FEM seed

Size

Mod (TCGA)

P (TCGA)

Mod (VAL)

P (VAL)

TGFB1I1

13

4.94

0.018

3.32

0.013

KRT18

47

4.37

0.001

1.9

0.191

LEP

13

4.57

0.049

2.89

0.045

CCL11

12

5.13

0.018

3.23

0.018

FAM107A

16

4.57

0.036

1.71

0.36

PROC

18

7.06

<0.001

1.68

0.374

FSTL1

56

3.91

0.033

2.00

0.125

MME

26

4.97

0.003

2.13

0.122

CAV1

58

3.65

0.046

2.83

0.003

  1. Columns label the seed gene symbol of the FEM, the size of FEM, its modularity (Mod) and P value (P) in the TCGA set, as well as the modularity and P values in the validation (VAL) set