TY - JOUR AU - Chen, S. M. AU - Dumler, J. S. AU - Bakken, J. S. AU - Walker, D. H. PY - 1994 DA - 1994// TI - Identification of a granulocytotropic Ehrlichia species as the etiologic agent of human disease JO - J Clin Microbiol VL - 32 ID - Chen1994 ER - TY - JOUR AU - Bakken, J. S. AU - Dumler, J. S. AU - Chen, S. M. AU - Eckman, M. R. AU - Etta, L. L. AU - Walker, D. H. PY - 1994 DA - 1994// TI - Human granulocytic ehrlichiosis in the upper Midwest United States. A new species emerging? JO - JAMA VL - 272 UR - https://doi.org/10.1001/jama.1994.03520030054028 DO - 10.1001/jama.1994.03520030054028 ID - Bakken1994 ER - TY - JOUR AU - Carlyon, J. A. AU - Chan, W. T. AU - Galan, J. AU - Roos, D. AU - Fikrig, E. PY - 2002 DA - 2002// TI - Repression of rac2 mRNA expression by Anaplasma phagocytophila is essential to the inhibition of superoxide production and bacterial proliferation JO - J Immunol VL - 169 UR - https://doi.org/10.4049/jimmunol.169.12.7009 DO - 10.4049/jimmunol.169.12.7009 ID - Carlyon2002 ER - TY - JOUR AU - Carlyon, J. A. AU - Fikrig, E. PY - 2006 DA - 2006// TI - Mechanisms of evasion of neutrophil killing by Anaplasma phagocytophilum JO - Curr Opin Hematol VL - 13 UR - https://doi.org/10.1097/01.moh.0000190109.00532.56 DO - 10.1097/01.moh.0000190109.00532.56 ID - Carlyon2006 ER - TY - JOUR AU - Carlyon, J. A. AU - Fikrig, E. PY - 2003 DA - 2003// TI - Invasion and survival strategies of Anaplasma phagocytophilum JO - Cell Microbiol VL - 5 UR - https://doi.org/10.1046/j.1462-5822.2003.00323.x DO - 10.1046/j.1462-5822.2003.00323.x ID - Carlyon2003 ER - TY - JOUR AU - Dumler, J. S. AU - Choi, K. S. AU - Garcia-Garcia, J. C. AU - Barat, N. S. AU - Scorpio, D. G. AU - Garyu, J. W. PY - 2005 DA - 2005// TI - Human granulocytic anaplasmosis and Anaplasma phagocytophilum JO - Emerg Infect Dis VL - 11 UR - https://doi.org/10.3201/eid1112.050898 DO - 10.3201/eid1112.050898 ID - Dumler2005 ER - TY - JOUR AU - Choi, K. S. AU - Park, J. T. AU - Dumler, J. S. PY - 2005 DA - 2005// TI - Anaplasma phagocytophilum delay of neutrophil apoptosis through the p38 mitogen-activated protein kinase signal pathway JO - Infect Immun VL - 73 UR - https://doi.org/10.1128/IAI.73.12.8209-8218.2005 DO - 10.1128/IAI.73.12.8209-8218.2005 ID - Choi2005 ER - TY - JOUR AU - Garyu, J. W. AU - Choi, K. S. AU - Grab, D. J. AU - Dumler, J. S. PY - 2005 DA - 2005// TI - Defective phagocytosis in Anaplasma phagocytophilum-infected neutrophils JO - Infect Immun VL - 73 UR - https://doi.org/10.1128/IAI.73.2.1187-1190.2005 DO - 10.1128/IAI.73.2.1187-1190.2005 ID - Garyu2005 ER - TY - JOUR AU - Borjesson, D. L. AU - Kobayashi, S. D. AU - Whitney, A. R. AU - Voyich, J. M. AU - Argue, C. M. AU - Deleo, F. R. PY - 2005 DA - 2005// TI - Insights into pathogen immune evasion mechanisms: Anaplasma phagocytophilum fails to induce an apoptosis differentiation program in human neutrophils JO - J Immunol VL - 174 UR - https://doi.org/10.4049/jimmunol.174.10.6364 DO - 10.4049/jimmunol.174.10.6364 ID - Borjesson2005 ER - TY - JOUR AU - Fuente, J. AU - Ayoubi, P. AU - Blouin, E. F. AU - Almazan, C. AU - Naranjo, V. AU - Kocan, K. M. PY - 2005 DA - 2005// TI - Gene expression profiling of human promyelocytic cells in response to infection with Anaplasma phagocytophilum JO - Cell Microbiol VL - 7 UR - https://doi.org/10.1111/j.1462-5822.2004.00485.x DO - 10.1111/j.1462-5822.2004.00485.x ID - Fuente2005 ER - TY - JOUR AU - Lee, H. C. AU - Kioi, M. AU - Han, J. AU - Puri, R. K. AU - Goodman, J. L. PY - 2008 DA - 2008// TI - Anaplasma phagocytophilum-induced gene expression in both human neutrophils and HL-60 cells JO - Genomics VL - 92 UR - https://doi.org/10.1016/j.ygeno.2008.05.005 DO - 10.1016/j.ygeno.2008.05.005 ID - Lee2008 ER - TY - JOUR AU - Banerjee, R. AU - Anguita, J. AU - Roos, D. AU - Fikrig, E. PY - 2000 DA - 2000// TI - Cutting edge: infection by the agent of human granulocytic ehrlichiosis prevents the respiratory burst by down-regulating gp91phox JO - J Immunol VL - 164 UR - https://doi.org/10.4049/jimmunol.164.8.3946 DO - 10.4049/jimmunol.164.8.3946 ID - Banerjee2000 ER - TY - JOUR AU - Ge, Y. AU - Yoshiie, K. AU - Kuribayashi, F. AU - Lin, M. AU - Rikihisa, Y. PY - 2005 DA - 2005// TI - Anaplasma phagocytophilum inhibits human neutrophil apoptosis via upregulation of bfl-1, maintenance of mitochondrial membrane potential and prevention of caspase 3 activation JO - Cell Microbiol VL - 7 UR - https://doi.org/10.1111/j.1462-5822.2004.00427.x DO - 10.1111/j.1462-5822.2004.00427.x ID - Ge2005 ER - TY - JOUR AU - Akkoyunlu, M. AU - Malawista, S. E. AU - Anguita, J. AU - Fikrig, E. PY - 2001 DA - 2001// TI - Exploitation of interleukin-8-induced neutrophil chemotaxis by the agent of human granulocytic ehrlichiosis JO - Infect Immun VL - 69 UR - https://doi.org/10.1128/IAI.69.9.5577-5588.2001 DO - 10.1128/IAI.69.9.5577-5588.2001 ID - Akkoyunlu2001 ER - TY - JOUR AU - Klein, M. B. AU - Hu, S. AU - Chao, C. C. AU - Goodman, J. L. PY - 2000 DA - 2000// TI - The agent of human granulocytic ehrlichiosis induces the production of myelosuppressing chemokines without induction of proinflammatory cytokines JO - J Infect Dis VL - 182 UR - https://doi.org/10.1086/315641 DO - 10.1086/315641 ID - Klein2000 ER - TY - JOUR AU - Scorpio, D. G. AU - Akkoyunlu, M. AU - Fikrig, E. AU - Dumler, J. S. PY - 2004 DA - 2004// TI - CXCR2 blockade influences Anaplasma phagocytophilum propagation but not histopathology in the mouse model of human granulocytic anaplasmosis JO - Clin Diagn Lab Immunol VL - 11 ID - Scorpio2004 ER - TY - JOUR AU - Garcia-Garcia, J. C. AU - Barat, N. C. AU - Trembley, S. J. AU - Dumler, J. S. PY - 2009 DA - 2009// TI - Epigenetic silencing of host cell defense genes enhances intracellular survival of the rickettsial pathogen Anaplasma phagocytophilum JO - PLoS Pathog VL - 5 UR - https://doi.org/10.1371/journal.ppat.1000488 DO - 10.1371/journal.ppat.1000488 ID - Garcia-Garcia2009 ER - TY - JOUR AU - Garcia-Garcia, J. C. AU - Rennoll-Bankert, K. E. AU - Pelly, S. AU - Milstone, A. M. AU - Dumler, J. S. PY - 2009 DA - 2009// TI - Silencing of host cell CYBB gene expression by the nuclear effector AnkA of the intracellular pathogen Anaplasma phagocytophilum JO - Infect Immun VL - 77 UR - https://doi.org/10.1128/IAI.00023-09 DO - 10.1128/IAI.00023-09 ID - Garcia-Garcia2009 ER - TY - JOUR AU - Stirzaker, C. AU - Song, J. Z. AU - Davidson, B. AU - Clark, S. J. PY - 2004 DA - 2004// TI - Transcriptional gene silencing promotes DNA hypermethylation through a sequential change in chromatin modifications in cancer cells JO - Cancer Res VL - 64 UR - https://doi.org/10.1158/0008-5472.CAN-03-3690 DO - 10.1158/0008-5472.CAN-03-3690 ID - Stirzaker2004 ER - TY - JOUR AU - Srivastava, S. AU - Mishra, R. K. AU - Dhawan, J. PY - 2010 DA - 2010// TI - Regulation of cellular chromatin state: insights from quiescence and differentiation JO - Organogenesis VL - 6 UR - https://doi.org/10.4161/org.6.1.11337 DO - 10.4161/org.6.1.11337 ID - Srivastava2010 ER - TY - JOUR AU - Baylin, S. B. AU - Herman, J. G. PY - 2000 DA - 2000// TI - DNA hypermethylation in tumorigenesis: epigenetics joins genetics JO - Trends Genet VL - 16 UR - https://doi.org/10.1016/S0168-9525(99)01971-X DO - 10.1016/S0168-9525(99)01971-X ID - Baylin2000 ER - TY - JOUR AU - Baylin, S. B. AU - Esteller, M. AU - Rountree, M. R. AU - Bachman, K. E. AU - Schuebel, K. AU - Herman, J. G. PY - 2001 DA - 2001// TI - Aberrant patterns of DNA methylation, chromatin formation and gene expression in cancer JO - Hum Mol Genet VL - 10 UR - https://doi.org/10.1093/hmg/10.7.687 DO - 10.1093/hmg/10.7.687 ID - Baylin2001 ER - TY - JOUR AU - Bierne, H. AU - Hamon, M. AU - Cossart, P. PY - 2012 DA - 2012// TI - Epigenetics and bacterial infections JO - Cold Spring Harb Perspect Med VL - 2 UR - https://doi.org/10.1101/cshperspect.a010272 DO - 10.1101/cshperspect.a010272 ID - Bierne2012 ER - TY - JOUR AU - Tolg, C. AU - Bagli, D. J. PY - 2012 DA - 2012// TI - Uropathogenic Escherichia coli infection: potential importance of epigenetics JO - Epigenomics VL - 4 UR - https://doi.org/10.2217/epi.12.5 DO - 10.2217/epi.12.5 ID - Tolg2012 ER - TY - JOUR AU - Zhang, Y. AU - Liu, T. AU - Meyer, C. A. AU - Eeckhoute, J. AU - Johnson, D. S. AU - Bernstein, B. E. PY - 2008 DA - 2008// TI - Model-based analysis of ChIP-Seq (MACS) JO - Genome Biol VL - 9 UR - https://doi.org/10.1186/gb-2008-9-9-r137 DO - 10.1186/gb-2008-9-9-r137 ID - Zhang2008 ER - TY - JOUR AU - Zang, C. AU - Schones, D. E. AU - Zeng, C. AU - Cui, K. AU - Zhao, K. AU - Peng, W. PY - 2009 DA - 2009// TI - A clustering approach for identification of enriched domains from histone modification ChIP-Seq data JO - Bioinformatics VL - 25 UR - https://doi.org/10.1093/bioinformatics/btp340 DO - 10.1093/bioinformatics/btp340 ID - Zang2009 ER - TY - JOUR AU - Bell, J. T. AU - Pai, A. A. AU - Pickrell, J. K. AU - Gaffney, D. J. AU - Pique-Regi, R. AU - Degner, J. F. PY - 2011 DA - 2011// TI - DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines JO - Genome Biol VL - 12 UR - https://doi.org/10.1186/gb-2011-12-1-r10 DO - 10.1186/gb-2011-12-1-r10 ID - Bell2011 ER - TY - JOUR AU - Sinclair, S. H. AU - Rennoll-Bankert, K. E. AU - Dumler, J. S. PY - 2014 DA - 2014// TI - Effector bottleneck: Microbial reprogramming of parasitized host cell transcription by epigenetic remodeling of chromatin structure JO - Front Genet VL - 5 UR - https://doi.org/10.3389/fgene.2014.00274 DO - 10.3389/fgene.2014.00274 ID - Sinclair2014 ER - TY - JOUR AU - Fullwood, M. J. AU - Liu, M. H. AU - Pan, Y. F. AU - Liu, J. AU - Xu, H. AU - Mohamed, Y. B. PY - 2009 DA - 2009// TI - An oestrogen-receptor-alpha-bound human chromatin interactome JO - Nature VL - 462 UR - https://doi.org/10.1038/nature08497 DO - 10.1038/nature08497 ID - Fullwood2009 ER - TY - JOUR AU - Berman, B. P. AU - Weisenberger, D. J. AU - Aman, J. F. AU - Hinoue, T. AU - Ramjan, Z. AU - Liu, Y. PY - 2012 DA - 2012// TI - Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina-associated domains JO - Nat Genet VL - 44 UR - https://doi.org/10.1038/ng.969 DO - 10.1038/ng.969 ID - Berman2012 ER - TY - JOUR AU - Ciechomska, M. AU - Laar, J. M. AU - O’Reilly, S. PY - 2014 DA - 2014// TI - Emerging role of epigenetics in systemic sclerosis pathogenesis JO - Genes Immun VL - 15 UR - https://doi.org/10.1038/gene.2014.44 DO - 10.1038/gene.2014.44 ID - Ciechomska2014 ER - TY - JOUR AU - Mello, V. D. AU - Pulkkinen, L. AU - Lalli, M. AU - Kolehmainen, M. AU - Pihlajamaki, J. AU - Uusitupa, M. PY - 2014 DA - 2014// TI - DNA methylation in obesity and type 2 diabetes JO - Ann Med VL - 46 UR - https://doi.org/10.3109/07853890.2013.857259 DO - 10.3109/07853890.2013.857259 ID - Mello2014 ER - TY - JOUR AU - Ronnerblad, M. AU - Andersson, R. AU - Olofsson, T. AU - Douagi, I. AU - Karimi, M. AU - Lehmann, S. PY - 2014 DA - 2014// TI - Analysis of the DNA methylome and transcriptome in granulopoiesis reveals timed changes and dynamic enhancer methylation JO - Blood VL - 123 UR - https://doi.org/10.1182/blood-2013-02-482893 DO - 10.1182/blood-2013-02-482893 ID - Ronnerblad2014 ER - TY - JOUR AU - Zilbauer, M. AU - Rayner, T. F. AU - Clark, C. AU - Coffey, A. J. AU - Joyce, C. J. AU - Palta, P. PY - 2013 DA - 2013// TI - Genome-wide methylation analyses of primary human leukocyte subsets identifies functionally important cell-type-specific hypomethylated regions JO - Blood VL - 122 UR - https://doi.org/10.1182/blood-2013-05-503201 DO - 10.1182/blood-2013-05-503201 ID - Zilbauer2013 ER - TY - JOUR AU - Kondo, T. AU - Oka, T. AU - Sato, H. AU - Shinnou, Y. AU - Washio, K. AU - Takano, M. PY - 2009 DA - 2009// TI - Accumulation of aberrant CpG hypermethylation by Helicobacter pylori infection promotes development and progression of gastric MALT lymphoma JO - Int J Oncol VL - 35 ID - Kondo2009 ER - TY - JOUR AU - Matsusaka, K. AU - Funata, S. AU - Fukayama, M. AU - Kaneda, A. PY - 2014 DA - 2014// TI - DNA methylation in gastric cancer, related to Helicobacter pylori and Epstein-Barr virus JO - World J Gastroenterol VL - 20 UR - https://doi.org/10.3748/wjg.v20.i14.3916 DO - 10.3748/wjg.v20.i14.3916 ID - Matsusaka2014 ER - TY - JOUR AU - Lee, M. J. AU - Min, B. J. AU - Choung, H. K. AU - Kim, N. AU - Kim, Y. A. AU - Khwarg, S. I. PY - 2014 DA - 2014// TI - Genome-wide DNA methylation profiles according to Chlamydophila psittaci infection and the response to doxycycline treatment in ocular adnexal lymphoma JO - Mol Vis VL - 20 ID - Lee2014 ER - TY - JOUR AU - Luco, R. F. AU - Allo, M. AU - Schor, I. E. AU - Kornblihtt, A. R. AU - Misteli, T. PY - 2011 DA - 2011// TI - Epigenetics in alternative pre-mRNA splicing JO - Cell VL - 144 UR - https://doi.org/10.1016/j.cell.2010.11.056 DO - 10.1016/j.cell.2010.11.056 ID - Luco2011 ER - TY - JOUR AU - Maunakea, A. K. AU - Nagarajan, R. P. AU - Bilenky, M. AU - Ballinger, T. J. AU - D’Souza, C. AU - Fouse, S. D. PY - 2010 DA - 2010// TI - Conserved role of intragenic DNA methylation in regulating alternative promoters JO - Nature VL - 466 UR - https://doi.org/10.1038/nature09165 DO - 10.1038/nature09165 ID - Maunakea2010 ER - TY - JOUR AU - Jjingo, D. AU - Conley, A. B. AU - Yi, S. V. AU - Lunyak, V. V. AU - Jordan, I. K. PY - 2012 DA - 2012// TI - On the presence and role of human gene-body DNA methylation JO - Oncotarget VL - 3 ID - Jjingo2012 ER - TY - JOUR AU - Shenker, N. AU - Flanagan, J. M. PY - 2012 DA - 2012// TI - Intragenic DNA methylation: implications of this epigenetic mechanism for cancer research JO - Br J Cancer VL - 106 UR - https://doi.org/10.1038/bjc.2011.550 DO - 10.1038/bjc.2011.550 ID - Shenker2012 ER - TY - JOUR AU - Kulis, M. AU - Queiros, A. C. AU - Beekman, R. AU - Martin-Subero, J. I. PY - 1829 DA - 1829// TI - Intragenic DNA methylation in transcriptional regulation, normal differentiation and cancer JO - Biochim Biophys Acta VL - 2013 ID - Kulis1829 ER - TY - JOUR AU - Rennoll-Bankert, K. E. AU - Sinclair, S. H. AU - Lichay, M. A. AU - Dumler, J. S. PY - 2014 DA - 2014// TI - Comparison and characterization of granulocyte cell models for Anaplasma phagocytophilum infection JO - Pathog Dis VL - 71 UR - https://doi.org/10.1111/2049-632X.12111 DO - 10.1111/2049-632X.12111 ID - Rennoll-Bankert2014 ER - TY - JOUR AU - Goodman, J. L. AU - Nelson, C. AU - Vitale, B. AU - Madigan, J. E. AU - Dumler, J. S. AU - Kurtti, T. J. PY - 1996 DA - 1996// TI - Direct cultivation of the causative agent of human granulocytic ehrlichiosis JO - N Engl J Med VL - 334 UR - https://doi.org/10.1056/NEJM199601253340401 DO - 10.1056/NEJM199601253340401 ID - Goodman1996 ER - TY - JOUR AU - Dunning Hotopp, J. C. AU - Lin, M. AU - Madupu, R. AU - Crabtree, J. AU - Angiuoli, S. V. AU - Eisen, J. PY - 2006 DA - 2006// TI - Comparative genomics of emerging human ehrlichiosis agents JO - PLoS Genet VL - 2 UR - https://doi.org/10.1371/journal.pgen.0020021 DO - 10.1371/journal.pgen.0020021 ID - Dunning Hotopp2006 ER - TY - JOUR AU - Guerrero-Preston, R. AU - Michailidi, C. AU - Marchionni, L. AU - Pickering, C. R. AU - Frederick, M. J. AU - Myers, J. N. PY - 2014 DA - 2014// TI - Key tumor suppressor genes inactivated by “greater promoter” methylation and somatic mutations in head and neck cancer JO - Epigenetics VL - 9 UR - https://doi.org/10.4161/epi.29025 DO - 10.4161/epi.29025 ID - Guerrero-Preston2014 ER - TY - JOUR AU - Aryee, M. J. AU - Liu, W. AU - Engelmann, J. C. AU - Nuhn, P. AU - Gurel, M. AU - Haffner, M. C. PY - 2013 DA - 2013// TI - DNA methylation alterations exhibit intraindividual stability and interindividual heterogeneity in prostate cancer metastases JO - Sci Transl Med VL - 5 UR - https://doi.org/10.1126/scitranslmed.3005211 DO - 10.1126/scitranslmed.3005211 ID - Aryee2013 ER - TY - JOUR AU - Yegnasubramanian, S. AU - Lin, X. AU - Haffner, M. C. AU - DeMarzo, A. M. AU - Nelson, W. G. PY - 2006 DA - 2006// TI - Combination of methylated-DNA precipitation and methylation-sensitive restriction enzymes (COMPARE-MS) for the rapid, sensitive and quantitative detection of DNA methylation JO - Nucleic Acids Res VL - 34 UR - https://doi.org/10.1093/nar/gnj022 DO - 10.1093/nar/gnj022 ID - Yegnasubramanian2006 ER - TY - JOUR AU - Yegnasubramanian, S. AU - Wu, Z. AU - Haffner, M. C. AU - Esopi, D. AU - Aryee, M. J. AU - Badrinath, R. PY - 2011 DA - 2011// TI - Chromosome-wide mapping of DNA methylation patterns in normal and malignant prostate cells reveals pervasive methylation of gene-associated and conserved intergenic sequences JO - BMC Genomics VL - 12 UR - https://doi.org/10.1186/1471-2164-12-313 DO - 10.1186/1471-2164-12-313 ID - Yegnasubramanian2011 ER - TY - JOUR AU - Easwaran, H. AU - Johnstone, S. E. AU - Neste, L. AU - Ohm, J. AU - Mosbruger, T. AU - Wang, Q. PY - 2012 DA - 2012// TI - A DNA hypermethylation module for the stem/progenitor cell signature of cancer JO - Genome Res VL - 22 UR - https://doi.org/10.1101/gr.131169.111 DO - 10.1101/gr.131169.111 ID - Easwaran2012 ER - TY - JOUR AU - Karimi, M. AU - Johansson, S. AU - Stach, D. AU - Corcoran, M. AU - Grander, D. AU - Schalling, M. PY - 2006 DA - 2006// TI - LUMA (LUminometric Methylation Assay)—a high throughput method to the analysis of genomic DNA methylation JO - Exp Cell Res VL - 312 UR - https://doi.org/10.1016/j.yexcr.2006.03.006 DO - 10.1016/j.yexcr.2006.03.006 ID - Karimi2006 ER - TY - JOUR AU - Ji, X. AU - Li, W. AU - Song, J. AU - Wei, L. AU - Liu, X. S. PY - 2006 DA - 2006// TI - CEAS: cis-regulatory element annotation system JO - Nucleic Acids Res VL - 34 UR - https://doi.org/10.1093/nar/gkl322 DO - 10.1093/nar/gkl322 ID - Ji2006 ER - TY - JOUR AU - Shin, H. AU - Liu, T. AU - Manrai, A. K. AU - Liu, X. S. PY - 2009 DA - 2009// TI - CEAS: cis-regulatory element annotation system JO - Bioinformatics VL - 25 UR - https://doi.org/10.1093/bioinformatics/btp479 DO - 10.1093/bioinformatics/btp479 ID - Shin2009 ER -