|  | # CpG loci | OR | (95 % CI) | p value |
---|---|---|---|---|---|
All | Including all probes | 408,749 | 0.61 | (0.47–0.80) | 0.0004 |
Excluding SNP probes | 360,342 | 0.62 | (0.47–0.81) | 0.0004 | |
CpG island | Island | 124,962 | 0.76 | (0.57–0.99) | 0.04 |
Shores | 98,890 | 0.72 | (0.55–0.93) | 0.01 | |
Shelves | 38,755 | 0.50 | (0.37–0.68) | 8.93 × 10−6 | |
None | 146,142 | 0.50 | (0.38–0.68) | 7.44 × 10−6 | |
Gene region feature category | TSS1500 | 59,494 | 0.70 | (0.53–0.92) | 0.01 |
TSS200 | 43,506 | 0.92 | (0.69–1.24) | 0.60 | |
5′UTR | 36,778 | 0.72 | (0.54–0.95) | 0.02 | |
1st exon | 19,024 | 0.85 | (0.65–1.12) | 0.25 | |
Promoter | 82,006 | 0.92 | (0.64–1.32) | 0.66 | |
Gene body | 138,499 | 0.51 | (0.38–0.69) | 1.58 × 10−5 | |
UTR3 | 15,065 | 0.40 | (0.29–0.57) | 2.90 × 10−7 | |
Intergenic | 96,383 | 0.57 | (0.43–0.75) | 6.86 × 10−5 |