methylumi
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methylumiR
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Load Illumina methylation data into a MethyLumiSet object.
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minfi
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densityPlot
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Density plots of methylation Beta values.
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watRmelon
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pfilter
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Filter data sets based on bead count and detection p-values
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minfi
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mdsPlot
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Multi-dimensional scaling (MDS) plots showing a 2-d projection of distances between samples.
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watRmelon
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dasen
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Calculate normalized betas from Illumina 450 K methylation arrays.
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lumi
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estimateBetas
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Estimate methylation Beta-value matrix from eSet-class object (include methylated and unmethylated probe intensities)
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