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Table 6 Sequences of primers used for pyrosequencing validation

From: Two independent epigenetic biomarkers predict survival in neuroblastoma

Genes

Amplification primers

Sequencing primers

Name

Sequence

CTSZ

Forward

GTTGGGGYGTAGGTGGGTAT

GTAGTTTTGGGGGGA

Reverse

[Btn]CACAAACATCAAAACTCACCCTAAATAT

DUSP2

Forward

TTGAGTGGTTTGGGATAGGTTAA

GGGATAGGTTAAAGGGT

Reverse

[Btn]AAAACRCAATCTAAACTAACCTAAAAACTT

CCND1

Forward

[Btn]GGGYGGTTGGGTTTGTGTATTT

CATATTTATCTTTTTATCTTCTACT

Reverse

ACCACCCTACCCTAATTCT

ECRG4

Forward

ATTTTGGGTAAGGAGGGTTAG

GGGTAAAAGGGTTGT

Reverse

[Btn]TACCATTTACCTCCTCTAAATTACCA

RUNX3

Forward

[Btn]GGTTTTGGGAATTAGAGTTTAAGG

AAAAAAAAATCAATTCCAACT

Reverse

ACTAACATAACCCCRAAATAATACATCCTA

TP73

Forward

AGTTAGTTGATAGAATTAAGGGAGATG

ATGGGAAAAGYGAAAATGTTAATAA

Reverse

[Btn]ATCTACACACRCCAAAAAACTAATATCCC

LCCR4

Forward

TGGAAAGAGGAGTTTTTAGTTTATTTAAG

AAATTTTAGGYGATGGTGAATTA

Reverse

[Btn]ATTACCTACCACAAAAACTTCATAATAT

MAGEA2

Forward

GATTTGYGTATTGGAGGTTAGAGGATA

GTAAGAYGTYGAGGGAGGATTGA

Reverse

[Btn]TAAAAAATCTTCCCCTACAAAATAATCCA

MGMT

Forward

TTTTTGGAGAGYGGTTGAGTTAGGT

AGGTTATYGGTGATTGTAGTT

Reverse

[Btn]CCAAACCAACAAAAACCCTATCA

NNAT

Forward

TGTAGGTTAGGGATTGGGGAGAA

TTAAAGTAAAATTTAAAAGTAAGT

Reverse

[Btn]TCCATCTTAACCCCCTTCCAA

TSPAN32

Forward

GAGGTTTATAAAGTTTTTTTTTGGAGG

GAGGTTTTAYGTGAGTGTGA

Reverse

[Btn]CACCCTTTAAAATATCCTATAACAACTT

HPN

Forward

ATGAAATAAAGATTTTTGGATTTGATGTAT

GTGAGTTTYGTTATTTTTTTTTTAT

Reverse

[Btn]TAAATAACTTCACCTATAAACCCTCAAAT

JAK2

Forward

[Btn]TTTTTTAGATAGTTATGGGATTGGTTTAT

AATAAAAACRACAAAACAACAAACA

Reverse

ACACTCCTTACCCTACTAAATTATATT

PAX 8

Forward

GTGATTTAGGAGGATTTAGAGAATTTTATT

ATTTTTTTGTATTTAGTTAGTTAA

Reverse

[Btn]CTCTCCTCCTTCTAAAATTTATTCC

TDGF1

Forward

ATTGGGGTTTGTTGTTGAAGAA

TTTATTTTTTTTTTAAATTGTTATT

Reverse

[Btn]AAACAACCAAAAAAAAACATTCATCTCC

RB1

Forward

[Btn]TTGGGGTTGGTTTATTTATTTAGTTTTG

TTACCCCTCCTCCCC

Reverse

AACRAAAAACCCTTACCCCTCCTC