From: Two independent epigenetic biomarkers predict survival in neuroblastoma
Genes | Amplification primers | Sequencing primers | |
---|---|---|---|
Name | Sequence | ||
CTSZ | Forward | GTTGGGGYGTAGGTGGGTAT | GTAGTTTTGGGGGGA |
Reverse | [Btn]CACAAACATCAAAACTCACCCTAAATAT | ||
DUSP2 | Forward | TTGAGTGGTTTGGGATAGGTTAA | GGGATAGGTTAAAGGGT |
Reverse | [Btn]AAAACRCAATCTAAACTAACCTAAAAACTT | ||
CCND1 | Forward | [Btn]GGGYGGTTGGGTTTGTGTATTT | CATATTTATCTTTTTATCTTCTACT |
Reverse | ACCACCCTACCCTAATTCT | ||
ECRG4 | Forward | ATTTTGGGTAAGGAGGGTTAG | GGGTAAAAGGGTTGT |
Reverse | [Btn]TACCATTTACCTCCTCTAAATTACCA | ||
RUNX3 | Forward | [Btn]GGTTTTGGGAATTAGAGTTTAAGG | AAAAAAAAATCAATTCCAACT |
Reverse | ACTAACATAACCCCRAAATAATACATCCTA | ||
TP73 | Forward | AGTTAGTTGATAGAATTAAGGGAGATG | ATGGGAAAAGYGAAAATGTTAATAA |
Reverse | [Btn]ATCTACACACRCCAAAAAACTAATATCCC | ||
LCCR4 | Forward | TGGAAAGAGGAGTTTTTAGTTTATTTAAG | AAATTTTAGGYGATGGTGAATTA |
Reverse | [Btn]ATTACCTACCACAAAAACTTCATAATAT | ||
MAGEA2 | Forward | GATTTGYGTATTGGAGGTTAGAGGATA | GTAAGAYGTYGAGGGAGGATTGA |
Reverse | [Btn]TAAAAAATCTTCCCCTACAAAATAATCCA | ||
MGMT | Forward | TTTTTGGAGAGYGGTTGAGTTAGGT | AGGTTATYGGTGATTGTAGTT |
Reverse | [Btn]CCAAACCAACAAAAACCCTATCA | ||
NNAT | Forward | TGTAGGTTAGGGATTGGGGAGAA | TTAAAGTAAAATTTAAAAGTAAGT |
Reverse | [Btn]TCCATCTTAACCCCCTTCCAA | ||
TSPAN32 | Forward | GAGGTTTATAAAGTTTTTTTTTGGAGG | GAGGTTTTAYGTGAGTGTGA |
Reverse | [Btn]CACCCTTTAAAATATCCTATAACAACTT | ||
HPN | Forward | ATGAAATAAAGATTTTTGGATTTGATGTAT | GTGAGTTTYGTTATTTTTTTTTTAT |
Reverse | [Btn]TAAATAACTTCACCTATAAACCCTCAAAT | ||
JAK2 | Forward | [Btn]TTTTTTAGATAGTTATGGGATTGGTTTAT | AATAAAAACRACAAAACAACAAACA |
Reverse | ACACTCCTTACCCTACTAAATTATATT | ||
PAX 8 | Forward | GTGATTTAGGAGGATTTAGAGAATTTTATT | ATTTTTTTGTATTTAGTTAGTTAA |
Reverse | [Btn]CTCTCCTCCTTCTAAAATTTATTCC | ||
TDGF1 | Forward | ATTGGGGTTTGTTGTTGAAGAA | TTTATTTTTTTTTTAAATTGTTATT |
Reverse | [Btn]AAACAACCAAAAAAAAACATTCATCTCC | ||
RB1 | Forward | [Btn]TTGGGGTTGGTTTATTTATTTAGTTTTG | TTACCCCTCCTCCCC |
Reverse | AACRAAAAACCCTTACCCCTCCTC |