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Table 1 Imprinted genes differentially methylated in HCC tumors compared to surrounding tissues

From: Aberrant DNA methylation of imprinted loci in hepatocellular carcinoma and after in vitro exposure to common risk factors

Unique ID (CpG site) P value FDR Fold change Symbol Expressed allele
USP29_E274_F <1e-07 <1e-07 0.29 USP29 Unknown
MKRN3_P108_F 2E-07 5E-05 0.25 MKRN3 Paternal
ZIM3_E203_F 2E-07 5E-05 0.24 ZIM3 Unknown
GABRA5_E44_R 4E-07 7E-05 0.28 GABRA5 Paternal
ZIM3_P718_R 4E-07 7E-05 0.20 ZIM3 Unknown
MKRN3_E144_F 8E-07 0.0001 0.22 MKRN3 Paternal
PWCR1_E81_R 1E-06 0.0001 0.45 PWCR1 Paternal
GABRA5_P862_R 1E-06 0.0001 0.19 GABRA5 Paternal
GABRG3_E123_R 2E-06 0.0002 0.21 GABRG3 Paternal
TRPM5_E87_F 5E-06 0.0003 0.29 TRPM5 Paternal
TRPM5_P979_F 7E-06 0.0004 0.36 TRPM5 Paternal
GABRA5_P1016_F 1E-05 0.0006 0.34 GABRA5 Paternal
MEST_P62_R 2E-05 0.0009 0.32 MEST Paternal
ZIM3_P451_R 4E-05 0.0014 0.51 ZIM3 Unknown
TRPM5_P721_F 1E-04 0.0023 0.23 TRPM5 Paternal
SNRPN_P230_R 1E-04 0.0024 0.50 SNRPN Paternal
INS_P804_R 1E-04 0.0027 0.31 INS Paternal
GLI3_E148_R 3E-04 0.0043 0.55 GLI3 Maternal
CPA4_P1265_R 3E-04 0.0048 0.41 CPA4 Maternal
GFI1_E136_F 4E-04 0.0059 4.35 GFI1 Paternal
PWCR1_P811_F 6E-04 0.008 0.50 PWCR1 Paternal
CDKN1C_P626_F 0.001 0.0109 2.17 CDKN1C Maternal
ASCL2_P360_F 0.001 0.0111 4.35 ASCL2 Maternal
HOXA11_P698_F 0.001 0.0111 3.70 HOXA11 Maternal
DCN_P1320_R 0.001 0.0115 0.33 DCN Unknown
NDN_P1110_F 0.001 0.0126 0.39 NDN Paternal
FASTK_P598_R 0.001 0.0127 0.54 FASTK Maternal
MAGEL2_P170_R 0.002 0.0141 0.40 MAGEL2 Paternal
GNAS_P86_F 0.002 0.0148 0.53 GNAS Isoform dependent
HOXA5_E187_F 0.002 0.0157 2.44 HOXA5 Maternal
MEST_P4_F 0.002 0.016 0.33 MEST Paternal
DIO3_P674_F 0.002 0.0167 3.23 DIO3 Unknown
GNAS_E58_F 0.002 0.0167 0.40 GNAS Isoform dependent
ASB4_P52_R 0.002 0.017 0.37 ASB4 Unknown
NNAT_P544_R 0.002 0.0175 1.41 NNAT Paternal
MAGEL2_E166_R 0.003 0.0187 0.41 MAGEL2 Paternal
SNRPN_E14_F 0.003 0.0188 0.49 SNRPN Paternal
KCNQ1_P546_R 0.003 0.0198 1.85 KCNQ1 Maternal
USP29_P205_R 0.004 0.0252 0.53 USP29 Unknown
SNRPN_seq_18_S99_F 0.004 0.0261 0.50 SNRPN Paternal
GFI1_P208_R 0.004 0.0274 2.44 GFI1 Paternal
H19_P541_F 0.005 0.0289 0.46 H19 Maternal
ASB4_E89_F 0.005 0.029 0.53 ASB4 Unknown
  1. FDR, false discovery rate.