From: Differences in smoking associated DNA methylation patterns in South Asians and Europeans
Target ID | Chr | Location (bp)a | Gene ID or region | Median β-values (IQR) European | Effect size (%)b | F-statisticc | P-valuec | Median β-values (IQR) South Asian | Effect size (%)b | F-statisticc | P-valuec | ||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Never smokers | Current smokers | Never smokers | Current smokers | ||||||||||
cg09069072 | 1 | 15482753 | TMEM51 | 0.86 (0.82, 0.88) | 0.80 (0.76, 0.83) | -0.06 | 13.44 | 4.5 × 10-4 | 0.84 (0.82, 0.87) | 0.79 (0.74, 0.83) | -0.05 | 17.82 | 6.2 × 10-5 |
cg25189904 | 1 | 68299493 | GNG12 | 0.23 (0.19, 0.29) | 0.16 (0.14, 0.17) | -0.07 | 28.75 | 8.0 × 10-7 | 0.28 (0.21, 0.34) | 0.21 (0.18, 0.24) | -0.06 | 11.27 | 1.2 × 10-3 |
cg09935388 | 1 | 92947588 | GFI1 | 0.54 (0.39, 0.76) | 0.21 (0.20, 0.27) | -0.33 | 32.92 | 1.7 × 10-7 | 0.58 (0.43, 0.74) | 0.34 (0.26, 0.45) | -0.24 | 17.07 | 8.6 × 10-5 |
cg21566642 | 2 | 233284661 | 2q37.1 | 0.49 (0.46, 0.53) | 0.31 (0.28, 0.33) | -0.18 | 140.33 | 3.4 × 10-19 | 0.46 (0.39, 0.50) | 0.35 (0.28, 0.37) | -0.12 | 57.96 | 4.1 × 10-11 |
cg03274391 | 3 | 22413232 | 3p24.3 | 0.30 (0.21, 0.45) | 0.66 (0.53, 0.77) | 0.36 | 40.10 | 1.4 × 10-8 | 0.33 (0.22, 0.44) | 0.36 (0.27, 0.70) | 0.03 | 6.05 | 1.6 × 10-2 |
cg05575921 | 5 | 373378 | AHRR | 0.77 (0.74, 0.79) | 0.53 (0.50, 0.55) | -0.24 | 413.13 | 4.1 × 10-33 | 0.77 (0.74, 0.79) | 0.57 (0.53, 0.62) | -0.19 | 295.15 | 6.7 × 10-29 |
cg13039251 | 5 | 32018601 | PDZD2 | 0.72 (0.65, 0.80) | 0.84 (0.77, 0.90) | 0.12 | 16.88 | 9.7 × 10-5 | 0.71 (0.66, 0.79) | 0.79 (0.74, 0.88) | 0.08 | 17.00 | 8.9 × 10-5 |
cg06126421 | 6 | 30720080 | 6p21.33 | 0.72 (0.59, 0.78) | 0.42 (0.38, 0.48) | -0.30 | 48.71 | 8.2 × 10-10 | 0.78 (0.68, 0.87) | 0.65 (0.53, 0.71) | -0.14 | 21.23 | 1.5 × 10-5 |
cg17619755 | 6 | 31760629 | VARS | 0.61 (0.56, 0.65) | 0.71 (0.63, 0.72) | 0.10 | 22.31 | 9.9 × 10-6 | 0.62 (0.58, 0.67) | 0.66 (0.64, 0.72) | 0.04 | 11.07 | 1.3 × 10-3 |
cg22132788 | 7 | 45002486 | MYO1G | 0.81 (0.76, 0.88) | 0.96 (0.94, 0.97) | 0.15 | 84.27 | 4.3 × 10-14 | 0.84 (0.77, 0.90) | 0.91 (0.87, 0.96) | 0.07 | 24.83 | 3.4 × 10-6 |
cg01731783 | 14 | 74211788 | C14orf43 | 0.41 (0.35, 0.44) | 0.33 (0.31, 0.37) | -0.08 | 97.05 | 2.1 × 10-15 | 0.40 (0.35, 0.42) | 0.32 (0.30, 0.38) | -0.08 | 16.28 | 1.2 × 10-4 |
cg03636183 | 19 | 17000585 | F2RL3 | 0.36 (0.31, 0.39) | 0.22 (0.19, 0.23) | -0.14 | 15.30 | 1.9 × 10-4 | 0.35 (0.32, 0.42) | 0.27 (0.24, 0.30) | -0.08 | 24.68 | 3.6 × 10-6 |