Table 1 Location, position, and distance between the SNPs and the CpG sites in the IL4R gene
CpG sites | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
08932316 | 05729093 | 03980304 | 00090800 | 06641959 | 01706029 | 26937798 | 16649560 | 08317580 | 09791102 | 01165142 | 05903710 | ||
TSS1500/ N_Shore | TSS1500/ Island | TSS1500/ Island | TSS200/ Island | 5′UTR/ Island | 5′UTR/ Island | 5′UTR/ S_Shore | 5′UTR | 5′UTR | Body | Body | 3′UTR | ||
Median, IQR (5%, 95%) | |||||||||||||
0.89, 0.02 (0.86, 0.92) | 0.06, 0.01 (0.04, 0.08) | 0.07, 0.02 (0.04, 0.10) | 0.03, 0.01 (0.01, 0.05) | 0.08, 0.02 (0.05, 0.11) | 0.07, 0.01 (0.05, 0.09) | 0.09, 0.02 (0.06, 0.12) | 0.21, 0.05 (0.15, 0.29) | 0.90, 0.02 (0.87, 0.93) | 0.88, 0.02 (0.85, 0.91) | 0.58, 0.05 (0.51, 0.65) | 0.87, 0.02 (0.84, 0.90) | ||
SNPs | Location # | 27324341 | 27324953 | 27325000 | 27325237 | 27325254 | 27325672 | 27326054 | 27338391 | 27345891 | 27353414 | 27367172 | 27375732 |
rs2057768 | |||||||||||||
5′UTR | 27322095 | −2246 | −2858 | −2905 | −3142 | −3159 | −3577 | −3959 | −16296 | −23796 | −31319 | −45077 | −53637 |
rs6498012 | |||||||||||||
Intron | 27331974 | 7633 | 7021 | 6974 | 6737 | 6720 | 6302 | 5920 | −6417 | −13917 | −21440 | −35198 | −43758 |
rs3024622 | |||||||||||||
Intron | 27365453 | 41112 | 40500 | 40453 | 40216 | 40199 | 39781 | 39399 | 27062 | 19562 | 12039 | −1719 | −10279 |
rs4787423 | |||||||||||||
Intron | 27367334 | 42993 | 42381 | 42334 | 42097 | 42080 | 41662 | 41280 | 28943 | 21443 | 13920 | 162 | −8398 |
rs3024676 | |||||||||||||
Coding | 27373558 | 49217 | 48605 | 48558 | 48321 | 48304 | 47886 | 47504 | 35167 | 27667 | 20144 | 6386 | −2174 |
rs3024685 | |||||||||||||
3′UTR | 27376910 | 52569 | 51957 | 51910 | 51673 | 51656 | 51238 | 50856 | 38519 | 31019 | 23496 | 9738 | 1178 |
rs12102586 | |||||||||||||
3′UTR | 27378053 | 53712 | 53100 | 53053 | 52816 | 52799 | 52381 | 51999 | 39662 | 32162 | 24639 | 10881 | 2321 |
rs16976728 | |||||||||||||
3′UTR | 27381712 | 57371 | 56759 | 56712 | 56475 | 56458 | 56040 | 55658 | 43321 | 35821 | 28298 | 14540 | 5980 |