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Table 2 Overview of the potential nonsynonymous Sirt1 SNPsin silico and analyzed

From: Sirtuin1 single nucleotide polymorphism (A2191G) is a diagnostic marker for vibration-induced white finger disease

dbSNP [Assay ID]

Region

5Near Seq 30 bp

Allele

3Near Seq 30 bp

Codon position

Protein residue

Amino acid position

rs1063114

Exon 8

agactgtgatgtcataattaatgaattgtg

A/T

cataggttaggtggtgaatatgccaaactt

3

Ter/Cys [*/C]

490

[C_9638456_10]

ancestral allele: T

rs1063111

Exon 8

ttgatgtagagcttcttggagactgtgatg

A/T

cataattaatgaattgtgtcataggttagg

2

Asp/Val [D/V]

484

[C_9638445_10]

ancestral allele: T

rs1063112

Exon 8

atgtagagcttcttggagactgtgatgtca

C/T

aattaatgaattgtgtcataggttaggtgg

2

Thr/Ile

485

[SIRT1-A485]

ancestral allele: T

[T/I]

rs35224060

Exon 9

ggagatgatcaagaggcaattaatgaagct

A/G

tatctgtgaaacaggaagtaacagacatga

1

Ile/Val

731

[C_25611590_10]

ancestral allele: n.a.

[I/V]

rs3740051

promoter

agccgcctccttttgcctctcttcctactt

A/G

ttaacaaaacagaacgactatccaacgtat

-

-

-

[C_27471644_10]

ancestral allele: A

rs2236319

Intron 4

agggatgtcagtctgatggagaaattgggt

A/G

tttgttagatctttatgagaaactggaaac

-

-

-

 

[C_15954063_10]

  

ancestral allele: A

    
  1. bp: base pair; dbSNP: Database of Single Nucleotide Polymorphisms.