ABT-737 and/or folate reverse the PDGF-induced alterations in the mitochondrial apoptotic pathway in low-grade glioma patients
© The Author(s) 2011
Received: 24 February 2011
Accepted: 10 April 2011
Published: 15 May 2011
Elevated activation of the platelet-derived growth factor (PDGF) pathway, apoptosis evasion phenotype, and global DNA hypomethylation are hallmarks frequently observed in cancers, such as in low-grade glioma (LGG). However, the orchestration of these malignant functions is not fully elucidated in LGG. Our study reveals that the co-presence of these hallmarks in the same LGG is frequent and confers poor prognosis in patients with LGG. Our data also indicate that the apoptosis evasion phenotype of these cells harboring a hypomethylation-induced activation of the PDGF pathway is associated with a hypomethylation of the bcl-xl and bcl-w genes and the phosphorylation and/or downregulation of three major pro-apoptotic BH3-only proteins: PUMA, Bad, and Bim. Consistent with this, we demonstrate that the use of folate, a DNA-methylating agent, promotes the reprogramming of the sensitivity of glioma cells to ABT-737/etoposide-induced apoptosis and reduces the dose of ABT-737 required to promote etoposide-induced apoptosis. This work supports the idea that the inclusion of folate and/or ABT-737 could be a promising adjuvant in the design of anti-glioma therapeutic protocols in clinical studies.
Acquired resistance to apoptosis or programmed cell death is one of the hallmarks of human cancer (Hanahan and Weinberg 2000). Defects in the apoptotic pathway and the disruption of the apoptotic program contribute to tumor initiation and progression, as well as to treatment resistance, since most current anti-cancer treatments including chemotherapy, radio- and immunotherapy act primarily by promoting cell death via the induction of apoptosis (Lowe and Lin 2000; Evan and Vousden 2001).
Studies over the last decade that aimed at identifying the underlying molecular mechanisms of apoptosis resistance have delineated multiple defects at various levels of the apoptosis signal transduction machinery. Among these multiple defects reported are changes in the expression of members of the Bcl-2 protein family that is a major cause for the resistance to apoptosis in tumor cells (Reed 2003). Thus, the presence of an “apoptosis evasion phenotype” in tumor cells is largely associated with the overexpression of certain anti-apoptotic proteins such as Bcl-2, Bcl-xl, and Bcl-w and/or is frequently correlated with the silencing, a low expression level, mutations, proteosomal degradation, and/or sequestration of certain pro-apoptotic proteins such as Bax, Bim, Bad, HRK, Bik, or Noxa (Martin et al. 2001). In glioma, these points have been illustrated and demonstrated by the fact that (1) high levels of Bcl-2 and/or Bcl-xl confer a resistance to radio- and/or chemotherapeutic drugs and promote the intracranial growth of glioma (Weller et al. 1995; Nagane et al. 1998; Del Bufalo et al. 2001; Bougras et al. 2004; Weiler et al. 2006), (2) Bax deficiency confers a high resistance to apoptosis induction (Cartron et al. 2003), (3) HRK is inactivated in astrocytic tumors, and this reduced HRK expression contributes to the loss of apoptotic control in high-grade tumors (Nakamura et al. 2005). Thus, the elucidation of these pathways over the past two decades has raised the possibility of developing and using therapies targeting the Bcl-2 protein family in order to induce apoptosis in tumor cells.
Among the multiple therapeutic strategies targeting the Bcl-2 protein family is the antagonism of the pro-survival function of anti-apoptotic proteins that seems to be the most attractive strategy. We and others have reported that HA14-1, the first small-molecule Bcl-2 inhibitor, has the capacity to overcome chemo- and radioresistance caused by Bcl-2 overexpression (Wang et al. 2000; Manero et al. 2006; Oliver et al. 2007). Several additional small-molecule inhibitors of anti-apoptotic proteins have been described including theaflavins and epigallechatechins, terphenyl derivates, NSC365400 (compound 6), gossypol derivates, GX015-070, and ABT-737 (Enyedy et al. 2001; Kutzki et al. 2002; Leone et al. 2003; Pellecchia and Reed 2004; Oltersdorf et al. 2005; Reed and Pellecchia 2005; Lessene et al. 2008). The latter molecule is the most potent and specific Bcl-2/Bcl-xl/Bcl-w inhibitor discovered to date. Mechanistic studies have revealed that ABT-737 is associated with the dissociation of interactions between pro-apoptotic and anti-apoptotic Bcl-2 family members, the change in conformation of Bax, cytochrome c release from mitochondria, and the activation of caspases (Oltersdorf et al. 2005; Kojima et al. 2006; Konopleva et al. 2006; van Delft et al. 2006).
Recently, we published that it is possible to abolish the “apopto-resistance” phenotype of glioma cells by reducing the expression of anti-apoptotic proteins such as Bcl-w via the folate-induced DNA (hyper)methylation of genes encoding these proteins (Hervouet et al. 2009). Based on these observations, we here complemented this point by (1) dissecting the mechanisms by which a folate treatment abrogates the “apopto-resistance” phenotype of glioma cells, (2) demonstrating that folate and ABT-737 can work together to reprogram the sensitivity of certain gliomas to the etoposide-induced apoptosis, (3) showing that the use of folate minimizes the dose of ABT-737 necessary to promote etoposide-induced apoptosis.
Activation of the PDGF pathway correlates with a low degree of global DNA methylation and the presence of an apoptosis evasion phenotype in low-grade glioma
We continued our study with these two groups. Firstly, we noted that the presence of these hallmarks was not associated with the histology of the LGG because a similar number of astrocytoma, oligodendrocytoma, or oligoastrocytoma were included in these two subgroups (Fig. 1b). Secondly, by estimating and comparing the survival curves for these two subgroups using Kaplan–Meier curve and the Cox proportional hazards survival regression analysis, we observed a statistical difference in the survival of these two groups of patients indicating that co-presence in LGG of a high PDGFrβ activity, a low level of DNA methylation, and a low DEVDase activity as a poor prognostic factor (Fig. 1c).
Collectively, these results suggest that the PDGF pathway plays an important role in apoptosis evasion in LGG, that this hallmark could be epigenetically regulated, and that the co-presence of a high PDGFrβ activity, a low level of DNA methylation, and a low DEVDase activity in LGG could be used as an alternative predictor of disease outcome and/or biomarker to select a subpopulation of patients.
The apoptosis evasion phenotype of Ntv-a/PDGF cells is generated by the disruption of the apoptotic program at the mitochondrial step symbolized by the loss of Bax activation.
To develop a therapeutic protocol based on a molecular rationale and able to promote apoptosis in tumor cells characterized by a low DNA methylation, a low intratumor apoptosis, and an elevated PDGF signaling pathway, we chose to use the Ntv-a/PDGF cells as these cells harbor these three signatures, as previously reported (Dai et al. 2001; Hervouet et al. 2009). In addition to using Ntv-a/LacZ cells as a control (non-tumor cells generated via a RCAS-LacZ infection), PDGFr activity was inhibited using a PDGFr tyrosine kinase inhibitor III or PDGFr inhibitor (PDGFri; Calbiochem #521232) or by promoting its silencing via the folate-induced methylation of the PDGFrβ gene (Fig. S1). Folate was also used to abolish the presence of DNA hypomethylation mechanisms of “apopto-resistance” in Ntv-a/PDGF cells.
We then decided to identify the PDGF dependence and/or the methylation dependence of these molecular mechanisms conferring the phenotype of apoptosis evasion in LGG cells. For this purpose, we first investigated whether the apoptosis evasion of Ntv-a/PDGF cells was due to a negative regulation of the mitochondrial step in the apoptotic program by assessing the quantity of cytochrome c released from mitochondria after UV induction of apoptosis. The choice of UV to induce apoptosis is due to the fact that UV induces apoptosis by multiple processes including DNA damage, activation of the tumor suppressor gene p53, triggering of cell death receptors either directly by UV or by autocrine release of death ligands, mitochondrial damage, and cytochrome c release (Kulms and Schwarz 2000). Subcellular fractionation and densitometric analysis of Western blots revealed that the quantity of cytochrome c released from mitochondria in Ntv-a/PDGF cells was greatly inferior to that released from mitochondria in Ntv-a/PDGF cells treated with folate or PDGFri (Fig. 2b). Confocal microscopy and MetaMorph analyses confirmed this result (Fig. 2c).
Since the latter results indicated that Ntv-a/PDGF cells harbored a disruption of the apoptotic program at the mitochondrial step, we analyzed the level of activated Bax after UV treatment because the activation of Bax is a crucial event in mitochondrial step of apoptotic program leading to the release of apoptogenic proteins (such as the cytochrome c) from the mitochondria. We performed Bax6A7 immunoprecipitation since Bax activation is characterized by the exposure of the amino terminal epitope recognized by the monoclonal antibody 6A7 (Hsu and Youle 1997). After UV-induced apoptosis, the quantity of activated Bax (or Bax6A7 positive) was lower in Ntv-a/PDGF than in Ntv-a/PDGF cells treated with folate or PDGFri, while the levels of total Bax remained unchanged in these cells (Fig. 2d). Thus, these results demonstrate that the disruption of the apoptotic program at the mitochondrial step present in Ntv-a/PDGF cells was due to the absence of Bax activation.
The low level of Bax activation in Ntv-a/PDGF cells is associated with the low level of PUMA and Bim induced by PDGF-Akt/FoxO3a signaling and the presence of pBim via the activation of PDGF/Erk signaling.
To identify the mechanism(s) leading to the low expression level of PUMA and Bim in Ntv-a/PDGF cells, we firstly quantified that the mRNAs coding for PUMA and Bim were overexpressed in Ntv-a/PDGF cells treated with PDGFri or folate (Fig. 3b). Since both PUMA and Bim are partially under the transcriptional control of FoxO3a, we analyzed the transcriptional activity of FoxO3a using the plasmid reporter method. As illustrated in Fig. 3b, both folate and PDGFri increased the FoxO3a transcriptional activity in Ntv-a/PDGF cells. These data suggest the presence of a FoxO3a inhibition mechanism in Ntv-a/PDGF cells. We also show that (1) the low transcriptional activity of FoxO3a in Ntv-a/PDGF cells was associated with its high phosphorylation in a context of high PDGF-induced Akt activity and (2) an Akt inhibitor treatment of Ntv-a/PDGF cells restored the high transcriptional activity of FoxO3a and a high expression of mRNAs coding for PUMA and Bim. Taken together, these results demonstrate that the low level of Bax activation in Ntv-a/PDGF cells is, in part, due to the low expression level of Bim and PUMA as a result of a negative regulation of FoxO3a initiated by PDGF and mediated by Akt.
Concerning Bim, we complemented our study by observing that the Ntv-a/PDGF cells harbored a high level of phospho-Bim (pBim), while the PDGFri and folate treatments decreased the presence of pBim in Ntv-a/PDGF cells (Fig. 3c). In addition, we noted that pBim was due to the PDGF–Erk pathway because the pBim level decreased when Ntv-a/PDGF cells were treated with PDGFri or U0126 (an Erk1/2 inhibitor). Thus, these observations reinforced and corroborated the relationship underlined above and existing between the low expression level of Bim and the low apoptosis level seen in Ntv-a/PDGF cells because literature reports that the Bim phosphorylation abrogates the pro-apoptotic function of this BH3-only protein via its degradation or via its incapacity to activate Bax (Harada et al. 2003; Luciano et al. 2003).
Overexpression of Bcl-w and Bcl-xl in Ntv-a/PDGF cells participates in the low level of Bax activation.
We then asked whether the high expression of Bcl-wmRNA and Bcl-xlmRNA was dependent on the nuclear factor κB (NFκB) activity in Ntv-a/PDGF cells as NFκB has been shown to regulate the expression of these transcripts (Tran et al. 2005). The data presented in Fig. 4c using a NFκB inhibitor confirmed this observation. We also showed that the high transcriptional activity of NFκB in Ntv-a/PDGF was associated with the presence of high levels of phospho-IκBα and a high Akt activity, while the low transcriptional activity of NFκB was associated with the presence of low levels of phospho-IκBα and a low Akt activity in Ntv-a/PDGF cells treated with folate or PDGFri (Fig. 4d).
Based on the DNA-methylating function of folate, we hypothesized that the downregulation of both Bcl-wmRNA and Bcl-xlmRNA observed in Ntv-a/PDGF cells treated with folate could be due to the methylation of the promoters of both bcl-x and bcl-w. Consistent with the fact that NFκB regulates the transcription of both bcl-x and bcl-w genes, we designed primers to assess the methylation status of the NFκB boxes localized within the promoter regions of these two genes. MSP revealed that the CG dinucleotides included within the NFκB boxes of both the bcl-x and bcl-w genes were unmethylated in Ntv-a/PDGF cells, but methylated when these cells were treated with folate (Fig. 4e).
Thus, our data indicate that the high expression of Bcl-xl and Bcl-w seen in Ntv-a/PDGF cells is due to the PDGF-initiated Akt/IκBα-mediated activation of NFκB in a context of unmethylation of the DNA-binding domains of this transcription factor localized within the promoter regions of the bcl-x and bcl-w genes.
Functional hierarchy of the Bcl-2 family members in Ntv-a/PDGF cells
We next studied the relationship between the level of Bax activation and the interactions existing between the Bcl-2, Bcl-xl, and Bcl-w proteins and Bax, PUMA, and Bim proteins.
Taken into consideration the roles of activators and/or sensitizers/derepressors of BH3-only proteins and on their hierarchical regulation, our data seem to indicate that the weak neutralization of Bcl-2, Bcl-xl, and Bcl-w by Bad could be at the origin of the strong antagonism of Bax, PUMA, and Bim by these same anti-apoptotic proteins.
Based on the above data, we investigated whether Bad has the capacity to displace PUMA or Bim from anti-apoptotic proteins. For this purpose, we developed an acellular assay in which the capacity of a given BH3 domain to disrupt the co-immunoprecipitation of a given anti-apoptotic protein with a considered BH3-only protein was analyzed. Consistent with a previous report (Kim et al. 2006), we noted that BadBH3 displaced PUMA and Bim from anti-apoptotic proteins such as Bcl-xl, while PUMABH3 or BimBH3 was unable to displace Bad, Bim, or PUMA from Bcl-xl (Fig. 5b ). In addition to the fact that Bad has the capacity to displace Bax from anti-apoptotic proteins, these results strongly suggest that the strong inhibition or antagonism of Bax, Bim, and PUMA by Bcl-2, Bcl-xl, and Bcl-w is, in part, due to the weak neutralization of these anti-apoptotic proteins by Bad.
We next extended our study to the identification of factors promoting the weak neutralization of Bcl-2, Bcl-xl, and Bcl-w by Bad observed in Ntv-a/PDGF cells. For this purpose, we asked whether the process was associated with the presence of Akt-induced phospho-Bad (pBadS136) because this posttranslational modification is known to abrogate the capacity of Bad to bind the anti-apoptotic proteins and Akt is activated by the PDGF signaling pathway. Our analyses revealed that it was the case because the high levels of pBadS136 and Akt activity were associated with the weak neutralization of the anti-apoptotic proteins by Bad in Ntv-a/PDGF cells, while the inverse situation was observed when these cells were treated with PDGFri, Akt, and strikingly with folate (Fig. 5c).
Thus, these results identify the loss of Bad pro-apoptotic function as a molecular determinant governing the apoptosis evasion phenotype of Ntv-a/PDGF cells and suggest that the restoration of Bad pro-apoptotic function could abrogate the apoptosis evasion phenotype of Ntv-a/PDGF cells. To summarize, all our results support the idea that the apoptosis evasion phenotype of Ntv-a/PDGF cells is favored by the loss of pro-apoptotic function of Bad, PUMA, and Bim in a context of overexpression of anti-apoptotic proteins.
Effect of the folate and/or ABT-737 pretreatment on etoposide-induced cell death of PCTC-LGG
Our previous experiments demonstrate that a folate treatment abrogates the PDGF-induced apoptosis evasion phenotype of Ntv-a/PDGF cells by methylating certain genes (bcl-w and bcl-xl), and by reorchestrating the hierarchical interactions of the Bcl-2 family members, we next compared the effect of folate and/or ABT-737 on etoposide-induced apopto-sensibility of primary cultured tumor cells obtained from human LGG (PCTC-LGG). We used this approach because, like folate, ABT-737 (a chemotherapeutic agent that docks within the hydrophobic groove of anti-apoptotic proteins, thereby disabling their capacity to antagonize the actions of pro-apoptotic proteins) has a weak single-agent cell-killing activity but promotes apoptosis in combination with anti-cancer agents unable to initially elicit apoptosis in cancer cells (Oltersdorf et al. 2005; van Delft et al. 2006).
As expected, we initially noted that ABT-737 and folate have weak single-agent cell-killing activity because these components induced less than 20% of cell death (Fig. 6b). Secondly, our data indicated that ABT-737 and folate promoted massive cell death (equal or superior to 60%) in PCTC#LGG-1 when used in association with etoposide. In addition, the synergy of ABT-737 and etoposide is also supported by the fact that cell death increased when the ABT-737 concentration increased (p = 0.0424). Thirdly, we noted that the triple combination of folate/ABT-737 (0.1 μM)/etoposide was more effective than the double combination of folate/etoposide or ABT-737 (0.1 μM)/etoposide (p = 0.0334, p = 0.0031). Fourthly, our data indicated that the use of folate in combination with ABT-737 and etoposide permitted a reduction in the concentration of ABT-737 used to induce massive cell death in PCTC#LGG-1 because no significant difference was observed between the percentage of cell death obtained between PCTC#LGG-1 treated with folate/ABT-737 (0.1 μM)/etoposide and folate/ABT-737 (10 μM)/etoposide (p = 0.6803). Lastly, similar experiments done with PCTC#LGG-2 indicated that ABT-737/etoposide was weakly toxic in these cells in comparison with folate/etoposide (18%, 22%, and 67% cell death, p = 0.0016 and p = 0.0017). In other terms, folate amplified the etoposide-induced cell death in PCTC#LGG-2 cells but not ABT-737. However, we noted that ABT-737 amplified the folate/etoposide-induced death in PCTC#LGG-2 cells (p = 0.0397, p = 0.0376) and this independently of the dose of ABT-737 (p = 0.8601).
Thus, these results indicate that we can reverse the cell death resistance in LGG to anti-cancer agents by using folate and/or ABT-737. In addition, our work indicates that the use of folate in combination with ABT-737/etoposide can markedly enhanced the response of LGG cells to ABT-737/etoposide and may minimize the dose of ABT-737 in order to reduce the ABT-737-induced co-lateral damage, even if this drug is generally well tolerated (Oltersdorf et al. 2005; Konopleva et al. 2006).
Recent advances in the identification of the molecular mechanisms that govern the chemo-resistance of cancer cells via the acquisition of apoptosis evasion phenotype have provided meaningful progress in the treatment of many human cancers. However, much more has to be done in order to design successful therapeutic protocols based on rational molecular targeting and the treatment personalization. Recently, we have begun to unveil that folate treatment has the capacity to increase apopto-sensitivity of Ntv-a/PDGF cells, i.e., in LGG cells induced by the constitutive activation of PDGF signaling pathway and characterized by a low level of DNA methylation and a phenotype of apopto-resistance (Hervouet et al. 2009). However, not much is known about how folate abrogates PDGF-induced resistance of anti-cancer treatments for the benefit of an apopto-sensitivity to these same anti-cancer treatments.
We have focused in this study on the role of folate in PDGF-induced dysfunctions in the apoptotic pathway responsible for resistance to anti-cancer drugs/treatments in low-grade glioma cells. Our data support the interest of this search because we found that the simultaneous presence of high PDGFr kinase activity, low level of DNA methylation, and low intratumor apoptosis constitutes a hallmark correlated with a poor survival prognosis in patients suffering from LGG. In addition, our results suggest that the presence of these three hallmarks could be used as a biomarker of disease outcome in LGG and/or for rational selection of patients susceptible to a personalized anti-cancer treatment including folate. However, the incorporation of folate into anti-glioma therapy must be supported by other experiments since folate as other epigenetic drugs may have a dual role in cancer prevention or progression because folate supplementation may decrease the risk of common cancers. Besides, numerous reports support this duality suggesting that high folate treatment may be associated with an increase in the risk of colorectal and prostate cancers in a randomized controlled trial and increase risk of breast cancer, while a low dose of folate may protect against colorectal cancer (Stolzenberg-Solomon et al. 2006; Van Guelpen et al. 2006; Cole et al. 2007; Lindzon et al. 2009; Stidley et al. 2010). Thus, since the importance of the dose schedule of the 5-aza-2′-deoxycytidine treatment in epigenetic therapy of cancer, the dose schedule of the folate treatment is certainly important (Lemaire et al. 2008).
Due to its dual role in PDGF signaling pathway and on the methylation status of genes coding for Bcl-w and Bcl-xl anti-apoptotic proteins, our data demonstrate that folate amplifies etoposide-induced apoptosis by dissociating Bax, Bim, and PUMA pro-apoptotic proteins from Bcl-2, Bcl-xl, and Bcl-w anti-apoptotic proteins for the benefit of Bad/Bcl-2, Bad/Bcl-xl, and Bad/Bcl-w interactions in a context of low expression of Bcl-xl and Bcl-w and of non-phosphorylation of Bad. Thus, these results support and complement the idea of an alternative model of hierarchical activation of pro-apoptotic functions of BH3-only proteins (Cartron et al. 2004; Certo et al. 2006; Kim et al. 2006; Gallenne et al. 2009). In other terms, we can speak of a model in which Bim and PUMA can activate directly Bax when they are no longer antagonized by Bcl-2, Bcl-xl, and Bcl-w anti-apoptotic proteins, i.e., when Bad (or other BH3-only proteins) engages and represses Bcl-2, Bcl-xl, and Bcl-w anti-apoptotic proteins. Consequently, the fact that the folate treatment “activates” the pro-apoptotic function of Bad via its non-phosphorylation indicates that this treatment acts, in part, likely by mimicking the effects of BH3 peptides or BH3 mimetic components. However, this activity is indirect since it is mediated by Bad, whereas that of BH3 mimetic components is direct since the majority of these small molecules have the capacity to bind anti-apoptotic proteins, leading to the disruption of interactions existing between anti- and pro-apoptotic proteins such as BH3-only proteins. Nevertheless, our data argue that folate and BH3 mimetic components such as ABT-737 have other common characteristics than the capacity to displace BH3-only proteins from its binding partners such as Bcl-2, Bcl-xl, and Bcl-w (Oltersdorf et al. 2005; Zhang et al. 2007b). Indeed, our data indicate that they have weak single-agent cell-killing activity, while they enhanced etoposide-induced cell death. In addition and despite the fact that these compounds share similar targets, it seems that folate and ABT-737 can work in synergy to amplify etoposide-induced cell death because the triple combination of folate/ABT-737/etoposide is more efficient than the double combination of folate/etoposide or ABT-737/etoposide. This point is also supported by the fact that the addition of ABT-737 to Ntv-a/PDGF cells treated with folate increases the release of Bim and PUMA from Bcl-xl (Fig. S2).
Due to the fact that interactions between pro- and anti-apoptotic proteins can be directly or indirectly disrupted by ABT-737 and folate treatment, it appears that the combination of folate and ABT-737 markedly amplifies etoposide-induced cell death and permits a reduction in ABT-737 doses. This point is crucial for the future use of ABT-737 in preclinical and/or clinical application because there are reports that ABT-737 can reduce lymphocyte counts and can cause dose-dependent acute thrombocytopenia by reducing the number of circulating platelets, whose turnover is regulated by apoptosis, even if ABT-737 seems to be well tolerated in animal model, or by normal hematopoietic and bone marrow cells (Oltersdorf et al. 2005; Konopleva et al. 2006; Mason et al. 2007; Zhang et al. 2007a).
Finally, the capacity of folate to promote ABT-737/etoposide-induced cell death in cells initially resistant to ABT-737/etoposide-induced cell death (such as PCTC#LGG-2) would suggest that among the potential pre-tropic effects of folate, some of them have the capacity to restore the caspase activation because ABT-737-induced apoptosis is caspase-dependent (van Delft et al. 2006). Besides, this point is consistent with what we have recently reported and the fact that folate treatment has the capacity to methylate the promoter region of survivin gene, i.e., a gene coding for an anti-apoptotic protein able to block apoptosis by inhibiting the caspases (Shin et al. 2001; Hervouet et al. 2009).
By dissecting a mechanism generating the phenotype of apopto-resistance in a context of malignant transformation induced by (or associated with) the activation of PDGF signaling pathway, our data open a new door to a better management of LGG by proposing new therapies including folate and ABT-737 as “amplificators” of response to usual chemotherapeutic drugs, and developed in association with the detection of biomarkers providing a better rationalization and personalization of anti-glioma treatments.
Materials and methods
Analyses of DNA methylation
DNA was extracted by using the QiaAmp DNA mini Kit (Qiagen, France). Four micrograms of genomic DNA was treated with the EZ DNA methylation Gold kit (Zymo Research/Proteigene, France) according to the manufacturer’s instructions. Five microliters of bisulfite DNA was used for methylation-specific PCR analysis.
RNA was isolated from cells by using the RNeasy Mini Kit (Qiagen, France). Reactions were realized in triplicate by using the Multiplex Quantitative PCR system (Mx40000), qPCR Core Reagent kit (Stratagene). PDGFrβ: TGCCTCAGCCAAATGTCACCTGC and TCACCACCTCGTATTCC; PUMA: GAAGAGCAAATGAGCCAAACG and GGAGCAACCGGCAAACG; Bim: TGGCAAAGCAACCTTCTGATG and GCAGGCTGCAATTGTCTACCT. Bcl-xl: GATGGAGGAACCAGGTTGTG and CCCCGGAAGGTCTTTTGTAT. Relative expression was calculated using the 2–Ct method.
Western blot and immunoprecipitation
In brief, proteins were size fractionated by sodium dodecyl sulfate–polyacrylamide gel electrophoresis. Proteins were transferred onto nitrocellulose or PVDF membrane. Saturation and blotting were realized by using SNAP i.d™ Protein Detection System (Millipore, France). The detection of proteins was performed using ECL™ (GE-Amersham Biosciences, France) chemiluminescence reagents. Bands were quantified using Quantity One® quantification software (BioRad, France). Immunoprecipitations were realized by using the Catch and Release® v2.0 Reversible Immunoprecipitation System (Millipore, France). Antibodies used are listed in Table S1.
We used Fugene6 reagent (Roche, France) to transfect the cells with 200 ng of each pTransLuc (Ozyme, France), with 10 ng of CMV-Renilla luciferase. Day 0 was obtained 24 h after transfections. At each time point, cells were harvested, and protein extracts were prepared for dual luciferase assay as described by the manufacturer (Promega, France), and luciferase levels were normalized to Renilla luciferase activity.
According to the internal committee of bioethics, the overall survival time was measured from the date of surgical resection to the last follow-up visit or death. Patients with tumor recurrence were censored. Data in bar graphs are expressed as the mean ± SD. Each result is representative of, at least, three independent experiments.
Ntv-a/LacZ and Ntv-a/PDGF cells
These cells come from the laboratory directed by Dr. Eric C. Holland (Memorial Sloan Kettering Cancer Center, New York, USA; Dai et al. 2001). Ntv-a cells were cultivated with Dulbecco's modified Eagle's medium (DMEM) with 10% fetal bovine serum and antibiotics. Folate treatment was performed by adding 4 μg/ml of folic acid into the DMEM medium. Thus, the concentration of folic acid was multiplied by two when cells were treated with folate treatment since DMEM contains 4 μg/ml of folic acid according to the manufacturer’s information.
We thank the Neurosurgery Department of the Hôpital G and R Laennec, CHU Nantes, and the Oncology Department of the Centre René Gauducheau, Nantes-Atlantique for the tumor samples. We thank microPICell (Plateau technique d’imagerie cellulaire—Centre de Recherche en Cancérologie Nantes-Angers, INSERMU892-IRF26) for its assistance for the confocal microscopy. We thank Dr. Lisa Oliver for the critical reading of this manuscript and her comments.
Conflict of interest
The authors declare that they have no financial relationship with the organization that sponsored the research.
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